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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.249 C 0.251 G 0.251 T 0.249 

MOTIF 1-RRSCGGAGGRWNG STREME-1
letter-probability matrix: alength= 4 w= 13 nsites= 728 E= 2.0e-016
 0.516086 0.058345 0.395625 0.029944
 0.474218 0.025460 0.453319 0.047003
 0.067929 0.548095 0.374956 0.009021
 0.000054 0.999838 0.000054 0.000054
 0.294252 0.004537 0.701157 0.000054
 0.088851 0.000054 0.911041 0.000054
 0.975927 0.006032 0.017988 0.000054
 0.000054 0.000054 0.999838 0.000054
 0.000054 0.001549 0.996849 0.001548
 0.419796 0.068802 0.409721 0.101681
 0.384554 0.105296 0.085242 0.424908
 0.243438 0.275678 0.318171 0.162713
 0.121737 0.069423 0.744522 0.064318

MOTIF 2-AACCCTAACCCTAAC STREME-2
letter-probability matrix: alength= 4 w= 15 nsites= 96 E= 2.1e-001
 0.931764 0.022782 0.022782 0.022673
 0.931764 0.022782 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.022782 0.022782 0.931764
 0.931764 0.022782 0.022782 0.022673
 0.931764 0.022782 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673
 0.022673 0.022782 0.022782 0.931764
 0.931764 0.022782 0.022782 0.022673
 0.931764 0.022782 0.022782 0.022673
 0.022673 0.931873 0.022782 0.022673

MOTIF 3-CTCTAGCTCCTCCA STREME-3
letter-probability matrix: alength= 4 w= 14 nsites= 57 E= 1.0e+000
 0.000648 0.998052 0.000652 0.000648
 0.000648 0.000652 0.000652 0.998049
 0.000648 0.962011 0.036692 0.000648
 0.000648 0.000652 0.018672 0.980028
 0.943988 0.018672 0.018672 0.018669
 0.000648 0.000652 0.962011 0.036689
 0.018669 0.962011 0.000652 0.018669
 0.000648 0.000652 0.000652 0.998049
 0.000648 0.998052 0.000652 0.000648
 0.000648 0.962011 0.000652 0.036689
 0.018669 0.000652 0.000652 0.980028
 0.018669 0.907951 0.036692 0.036689
 0.018669 0.980032 0.000652 0.000648
 0.943988 0.018672 0.036692 0.000648

MOTIF 4-AGTACCCAAGG STREME-4
letter-probability matrix: alength= 4 w= 11 nsites= 58 E= 2.0e+000
 0.959700 0.019806 0.000691 0.019803
 0.019803 0.000691 0.902311 0.077195
 0.019803 0.000691 0.000691 0.978815
 0.978815 0.000691 0.019806 0.000688
 0.019803 0.806712 0.115429 0.058056
 0.000688 0.959703 0.000691 0.038918
 0.000688 0.997933 0.000691 0.000688
 0.959700 0.000691 0.019806 0.019803
 0.978815 0.019806 0.000691 0.000688
 0.019803 0.000691 0.978818 0.000688
 0.019803 0.000691 0.959703 0.019803

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc GSM4160267-RNF4_ETO_ExoT_only_meme-chip/streme_out -dna --p GSM4160267-RNF4_ETO_ExoT_only_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000
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CPU:		snode035.sibcb.ac.cn
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FINALTIME:	14.06 seconds
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