******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: accurate and versatile sequence motif discovery", Bioinformatics, Mar. 24, 2021. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.367 C 0.133 G 0.133 T 0.367 MOTIF 1-HYYARNYTRRD STREME-1 letter-probability matrix: alength= 4 w= 11 nsites= 1058 E= 6.1e-012 0.280469 0.239753 0.118874 0.360905 0.116363 0.373091 0.155133 0.355412 0.146518 0.382551 0.006587 0.464344 0.755921 0.003028 0.029161 0.211890 0.403433 0.053633 0.434016 0.108918 0.307089 0.192911 0.192911 0.307089 0.108918 0.434016 0.053633 0.403433 0.211890 0.029161 0.003028 0.755921 0.464344 0.006587 0.382551 0.146518 0.355412 0.155133 0.373091 0.116363 0.360905 0.118874 0.239753 0.280469 MOTIF 2-ATATATATATATATAT STREME-2 letter-probability matrix: alength= 4 w= 16 nsites= 1500 E= 1.0e-008 0.999764 0.000049 0.000049 0.000137 0.000137 0.000049 0.000049 0.999764 0.999764 0.000049 0.000049 0.000137 0.016259 0.066345 0.005265 0.912131 0.979727 0.001339 0.016064 0.002870 0.002716 0.001339 0.000049 0.995895 0.999764 0.000049 0.000049 0.000137 0.017087 0.033881 0.007037 0.941995 0.941995 0.007037 0.033881 0.017087 0.000137 0.000049 0.000049 0.999764 0.995895 0.000049 0.001339 0.002716 0.002870 0.016064 0.001339 0.979727 0.912131 0.005265 0.066345 0.016259 0.000137 0.000049 0.000049 0.999764 0.999764 0.000049 0.000049 0.000137 0.000137 0.000049 0.000049 0.999764 MOTIF 3-KTTAVATK STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 971 E= 3.1e-008 0.179492 0.010889 0.290912 0.518707 0.000078 0.120492 0.261047 0.618383 0.172509 0.006165 0.210166 0.611159 0.500033 0.215877 0.131407 0.152683 0.436325 0.296108 0.267489 0.000078 0.824150 0.001509 0.071822 0.102519 0.000078 0.000028 0.000028 0.999865 0.000078 0.210703 0.325383 0.463836 MOTIF 4-KTARAAR STREME-4 letter-probability matrix: alength= 4 w= 7 nsites= 517 E= 3.8e-003 0.000352 0.093911 0.368966 0.536770 0.000352 0.000128 0.000128 0.999393 0.886082 0.000128 0.000128 0.113663 0.598510 0.070713 0.330425 0.000352 0.538829 0.230981 0.000128 0.230062 0.874366 0.124323 0.000959 0.000352 0.462362 0.099423 0.382382 0.055834 MOTIF 5-AGAAAGAAAGAAAG STREME-5 letter-probability matrix: alength= 4 w= 14 nsites= 184 E= 5.4e-002 0.999315 0.000144 0.000144 0.000397 0.000397 0.000144 0.999062 0.000397 0.991811 0.007647 0.000144 0.000397 0.969298 0.000144 0.000144 0.030414 0.999315 0.000144 0.000144 0.000397 0.000397 0.000144 0.999062 0.000397 0.999315 0.000144 0.000144 0.000397 0.969298 0.000144 0.000144 0.030414 0.999315 0.000144 0.000144 0.000397 0.000397 0.000144 0.999062 0.000397 0.999315 0.000144 0.000144 0.000397 0.928553 0.000144 0.048391 0.022912 0.984311 0.007646 0.000144 0.007899 0.000397 0.000144 0.999062 0.000397 MOTIF 6-AGGGAGGGAGGGAG STREME-6 letter-probability matrix: alength= 4 w= 14 nsites= 83 E= 6.2e-002 0.998694 0.000274 0.000274 0.000757 0.008609 0.000274 0.961761 0.029356 0.000757 0.000274 0.998212 0.000757 0.058116 0.014577 0.897957 0.029350 0.984398 0.014571 0.000274 0.000757 0.015065 0.014571 0.969607 0.000757 0.086692 0.000274 0.897980 0.015054 0.058058 0.000274 0.940910 0.000757 0.984398 0.000274 0.014571 0.000757 0.072355 0.000274 0.926614 0.000757 0.000757 0.000274 0.998212 0.000757 0.101196 0.000274 0.897772 0.000757 0.998694 0.000274 0.000274 0.000757 0.129749 0.000274 0.869220 0.000757 MOTIF 7-AATGAR STREME-7 letter-probability matrix: alength= 4 w= 6 nsites= 380 E= 1.0e-001 0.805297 0.000199 0.193956 0.000549 0.999054 0.000199 0.000199 0.000549 0.000549 0.000199 0.000199 0.999054 0.000549 0.223487 0.645034 0.130930 0.571405 0.204771 0.223275 0.000549 0.364810 0.134510 0.476371 0.024309 MOTIF 8-CATTTTCTTTA STREME-8 letter-probability matrix: alength= 4 w= 11 nsites= 114 E= 1.7e-001 0.127139 0.800732 0.000196 0.071934 0.999069 0.000196 0.000196 0.000540 0.194369 0.000196 0.173667 0.631768 0.041317 0.010389 0.000196 0.948098 0.051507 0.000196 0.000196 0.948102 0.000540 0.010389 0.040969 0.948102 0.086316 0.766000 0.106367 0.041317 0.031120 0.081755 0.000196 0.886930 0.000540 0.000196 0.010389 0.988876 0.051511 0.030776 0.000196 0.917518 0.907321 0.000196 0.061360 0.031124 MOTIF 9-CCTTCCTTCCTTCCT STREME-9 letter-probability matrix: alength= 4 w= 15 nsites= 102 E= 1.7e-001 0.033364 0.921182 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 0.033364 0.012091 0.012091 0.942455 0.033364 0.921182 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 0.033364 0.012091 0.012091 0.942455 0.033364 0.921182 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 0.033364 0.012091 0.012091 0.942455 0.033364 0.921182 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 MOTIF 10-CTGTCTCAAAAAAAA STREME-10 letter-probability matrix: alength= 4 w= 15 nsites= 44 E= 2.6e-001 0.001388 0.839432 0.026718 0.132462 0.001388 0.210222 0.000503 0.787887 0.132462 0.000503 0.865647 0.001388 0.001388 0.026718 0.000503 0.971391 0.001388 0.891851 0.079158 0.027603 0.001388 0.000503 0.000503 0.997606 0.001388 0.996721 0.000503 0.001388 0.892746 0.026718 0.052933 0.027603 0.866532 0.000503 0.131577 0.001388 0.945176 0.000503 0.000503 0.053818 0.997606 0.000503 0.000503 0.001388 0.866532 0.052933 0.052933 0.027603 0.604330 0.184018 0.210264 0.001388 0.735457 0.026718 0.131577 0.106248 0.787887 0.026718 0.157792 0.027603 MOTIF 11-AAAATT STREME-11 letter-probability matrix: alength= 4 w= 6 nsites= 392 E= 4.5e-001 0.887058 0.007355 0.103158 0.002429 0.859429 0.107072 0.012344 0.021155 0.859243 0.093516 0.045147 0.002093 0.988767 0.000758 0.000758 0.009716 0.002093 0.000758 0.000758 0.996390 0.002093 0.106663 0.204249 0.686995 MOTIF 12-ACACACACACAY STREME-12 letter-probability matrix: alength= 4 w= 12 nsites= 98 E= 4.5e-001 0.998348 0.000347 0.000347 0.000958 0.000958 0.997737 0.000347 0.000958 0.998348 0.000347 0.000347 0.000958 0.000958 0.961541 0.000347 0.037154 0.998348 0.000347 0.000347 0.000958 0.000958 0.943432 0.000347 0.055263 0.962159 0.000347 0.018441 0.019052 0.000958 0.943447 0.018441 0.037154 0.998348 0.000347 0.000347 0.000958 0.000958 0.997737 0.000347 0.000958 0.957263 0.000347 0.000347 0.042042 0.037154 0.496709 0.039792 0.426345 MOTIF 13-CAGAGYGAGACT STREME-13 letter-probability matrix: alength= 4 w= 12 nsites= 83 E= 5.2e-001 0.000686 0.972485 0.000248 0.026581 0.985870 0.000248 0.013196 0.000686 0.117224 0.064992 0.791203 0.026581 0.985870 0.000248 0.000248 0.013633 0.052486 0.000248 0.946580 0.000686 0.000686 0.402129 0.000248 0.596937 0.311855 0.000248 0.687211 0.000686 0.998818 0.000248 0.000248 0.000686 0.104287 0.000248 0.894779 0.000686 0.998818 0.000248 0.000248 0.000686 0.000686 0.998380 0.000248 0.000686 0.000686 0.298210 0.026149 0.674956 MOTIF 14-GGAGGAGAAGGAGAA STREME-14 letter-probability matrix: alength= 4 w= 15 nsites= 30 E= 5.2e-001 0.002284 0.043966 0.951466 0.002284 0.261632 0.000828 0.735256 0.002284 0.996061 0.000828 0.000828 0.002284 0.002284 0.000828 0.994604 0.002284 0.002284 0.000828 0.994604 0.002284 0.996061 0.000828 0.000828 0.002284 0.002284 0.000828 0.994604 0.002284 0.779981 0.000828 0.216908 0.002284 0.996061 0.000828 0.000828 0.002284 0.002284 0.000828 0.994604 0.002284 0.002284 0.000828 0.994604 0.002284 0.996061 0.000828 0.000828 0.002284 0.002284 0.000828 0.994604 0.002284 0.909715 0.000828 0.087173 0.002284 0.996061 0.000828 0.000828 0.002284 MOTIF 15-CTCTCTCTCTCTKTC STREME-15 letter-probability matrix: alength= 4 w= 15 nsites= 95 E= 1.8e+000 0.000979 0.884609 0.018856 0.095555 0.000979 0.086905 0.000355 0.911761 0.000979 0.796016 0.008030 0.194975 0.000979 0.000355 0.000355 0.998311 0.000979 0.997686 0.000355 0.000979 0.000979 0.000355 0.018853 0.979813 0.000979 0.832993 0.008030 0.157998 0.000979 0.037350 0.000355 0.961315 0.019477 0.942193 0.000355 0.037975 0.037982 0.037354 0.018853 0.905811 0.000979 0.976987 0.021055 0.000979 0.000979 0.000355 0.000355 0.998311 0.037975 0.000355 0.344784 0.616887 0.000979 0.000355 0.003915 0.994750 0.000979 0.997686 0.000355 0.000979 MOTIF 16-YCTAGR STREME-16 letter-probability matrix: alength= 4 w= 6 nsites= 383 E= 1.9e+000 0.129039 0.438563 0.035398 0.397001 0.001377 0.822740 0.110248 0.065636 0.001377 0.000499 0.000499 0.997625 0.997625 0.000499 0.000499 0.001377 0.065636 0.110248 0.822740 0.001377 0.397001 0.035398 0.438563 0.129039 MOTIF 17-ACTGCACT STREME-17 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e+000 0.942455 0.012091 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 0.033364 0.012091 0.921182 0.033364 0.033364 0.921182 0.012091 0.033364 0.942455 0.012091 0.012091 0.033364 0.033364 0.921182 0.012091 0.033364 0.033364 0.012091 0.012091 0.942455 ******************************************************************************** Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05). ******************************************************************************** COMMAND: streme --verbosity 1 --oc GSM6180992-S1_END_seq_SW48_replicate2_meme-chip/streme_out -dna --p GSM6180992-S1_END_seq_SW48_replicate2_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000 ******************************************************************************** CPU: snode015.sibcb.ac.cn ******************************************************************************** FINALTIME: 44.82 seconds ********************************************************************************