The name of the alphabet symbol.

[close ]

The frequency of the alphabet symbol as defined by the background model.

[close ]

MEME-ChIP outputs a tab-separated values (TSV) file ('summary.tsv') that contains one line for each motif found by MEME-ChIP. The lines are sorted in order of decreasing statistical significance. The first line in the file contains the (tab-separated) names of the fields. Your command line is given at the end of the file in a comment line starting with the character '#'. The names and meanings of the fields in the are described in the table below.

field name contents
1 MOTIF_INDEX The index of the motif in the "Motifs in MEME text format" file ('combined.meme') output by MEME-ChIP.
2 MOTIF_SOURCE The name of of the program that found the de novo motif, or the name of a file of motifs ("motif database file") that contains the motif.
3 MOTIF_ID The name of the motif, which is unique in the motif discovery program output or in the motif database file.
4 ALT_ID An alternate name for the motif that may be provided in the motif discovery program output or in the motif database file.
5 CONSENSUS The ID of the de novo motif, or a consensus sequence computed from the letter frequencies in the known motif (as described below).
6 WIDTH The width of the motif.
7 SITES The number of sites reported by the de novo program, or the number of "Total Matches" reported by CentriMo.
8 E-VALUE The statistical significance of the motif.
9 E-VALUE_SOURCE The program that reported the E-value.
10 MOST_SIMILAR_MOTIF The known motif most similar to this motif according to Tomtom.
11 URL A link to a description of the most similar motif, or to the known motif.

A consensus sequence is constructed from each column in a motif's frequency matrix using the "50% rule" as follows:

  1. The letter frequencies in the column are sorted in decreasing order.
  2. Letters with frequency less 50% of the maximum are discarded.
  3. The letter used in this position in the consensus sequence is determined by the first rule below that applies:
[ close ]

MEME-ChIP outputs a text file ('combined.meme') containing all the significant motifs found by MEME-ChIP. The motifs are in Minimal MEME Motif format, and their IDs correspond to the motif indices given in the "Summary in TSV Format" file ('summary.tsv').

Note: The 'nsites=' and 'E=' fields in the motif headers are only relevant for the MEME and DREME motifs. For known motifs, those values do not refer to the number of sites in the input sequences.

[ close ]

This is a link to the motif in the output of the particular motif discovery (e.g., MEME) or motif enrichment (e.g., CentriMo) program that reported it.

[ close ]

This is the significance of the motif according to the particular motif discovery (e.g., MEME) or motif enrichment (e.g., CentriMo) program that reported it.

Follow the link under the "Discovery/Enrichment Program" column for more information on how the significance value was derived.

[ close ]

Motifs reported by a motif discovery program (e.g., MEME) are compared with known motifs in a motif database specified by the user. This column lists the (up to) three most similar motifs. Only known motifs with TOMTOM similarity E-values of less than 1.0 to the discovered motif will be shown here. Clicking any of these links will show the TOMTOM results where all alignments can be viewed.

Motifs reported by a motif enrichment program (e.g., CentriMo) list the motif's name and a link to the motif's entry on the database website if it is available.

[ close ]

This graph shows the distribution of the best matches to the motif in the sequences as found by a CentriMo analysis.

The vertical line in the center of the graph corresponds to the center of the sequences.

Clicking on a motif's graph will take you to the CentriMo output with that motif selected for graphing.

[ close ]

Clicking here will show you all the motifs found by motif discovery or motif enrichment analysis that are significantly similar to the reported motif.

The additional motifs are shown aligned with the reported motif, sorted in order of significance of the motif according to the particular motif discovery (e.g., MEME) or motif enrichment (e.g., CentriMo) program that reported it.

To cluster the motifs MEME-ChIP does the following:

  1. Start with no groups and all significant reported motifs.
  2. Run TOMTOM with all significant reported motifs to determine pairwise similarity.
  3. Group Highly Similar Motifs---
    While ungrouped motifs:
    Select most significant ungrouped motif.
    This is called the "seed" motif for the group and we will call the E-value of its seed motif the group's "significance".
    Form a new group from the seed motif and all other motifs that are not yet in a group and who are strongly similar to the seed motif (default: TOMTOM E-value ≤ 0.05).
  4. Merge Groups---
    For each group (most significant to least significant), merge it with any less significant group if all of its motifs are weakly similar to the first group's seed motif (default: TOMTOM E-value ≤ 0.1).
[ close ]

Clicking here takes you to the CentriMo motif enrichment analysis with the results for this all the motifs in this group.

[ close ]

This lists links to related content, which may include:

[ close ]

For further information on how to interpret these results please access https://meme-suite.org/meme/doc/meme-chip-output-format.html.
To get a copy of the MEME software please access https://meme-suite.org.

If you use MEME-ChIP in your research, please cite the following paper:
Philip Machanick and Timothy L. Bailey, "MEME-ChIP: motif analysis of large DNA datasets", Bioinformatics 27(12):1696-1697, 2011. [full text]

Motifs   |   Programs   |   Input Files   |   Program information   |   Summary in TSV Format 
  |   Motifs in MEME Text Format 

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Motifs

The significant motifs (E-value ≤ 0.05) found by the programs MEME, STREME and CentriMo; clustered by similarity and ordered by E-value.

Expand All Clusters Collapse All Clusters
Motif FoundDiscovery/​Enrichment Program 
E-value 
Known or Similar Motifs 
Distribution 
SpaMo & FIMO 
CentriMo2.0e-110Mot3p (Mot3p&consensus=WAGGTA)
    Reverse Complement ⇆Show 8 More ↧Show Less ↥
    CentriMo Group ↷
    Motif FoundDiscovery/​Enrichment Program 
    E-value 
    Known or Similar Motifs 
    Distribution 
    SpaMo & FIMO 
    MEME1.5e-062
    Reverse Complement ⇆Show 1 More ↧Show Less ↥
    CentriMo Group ↷
    Motif FoundDiscovery/​Enrichment Program 
    E-value 
    Known or Similar Motifs 
    Distribution 
    SpaMo & FIMO 
    CentriMo2.8e-058Mot3p (Mot3p&consensus=AAGGWT)
      Reverse Complement ⇆
      Motif FoundDiscovery/​Enrichment Program 
      E-value 
      Known or Similar Motifs 
      Distribution 
      SpaMo & FIMO 
      CentriMo from STREME8.9e-055Arg80p (Arg80p&consensus=CCTCTAAAGG)
      Reverse Complement ⇆
      Motif FoundDiscovery/​Enrichment Program 
      E-value 
      Known or Similar Motifs 
      Distribution 
      SpaMo & FIMO 
      CentriMo1.5e-037Nrg2p (Nrg2p&consensus=HAGGGtcB)
        Reverse Complement ⇆Show 10 More ↧Show Less ↥
        CentriMo Group ↷
        Motif FoundDiscovery/​Enrichment Program 
        E-value 
        Known or Similar Motifs 
        Distribution 
        SpaMo & FIMO 
        CentriMo from STREME6.8e-036
        Reverse Complement ⇆
        Motif FoundDiscovery/​Enrichment Program 
        E-value 
        Known or Similar Motifs 
        Distribution 
        SpaMo & FIMO 
        CentriMo1.2e-027Reb1p (Reb1p&consensus=cMGGGTAAc)
          Reverse Complement ⇆Show 2 More ↧Show Less ↥
          CentriMo Group ↷
          Motif FoundDiscovery/​Enrichment Program 
          E-value 
          Known or Similar Motifs 
          Distribution 
          SpaMo & FIMO 
          CentriMo1.8e-027Msn2p (Msn2p&consensus=agGRRB)
            Reverse Complement ⇆Show 2 More ↧Show Less ↥
            CentriMo Group ↷
            Motif FoundDiscovery/​Enrichment Program 
            E-value 
            Known or Similar Motifs 
            Distribution 
            SpaMo & FIMO 
            CentriMo from STREME5.0e-026
            Reverse Complement ⇆Show 1 More ↧Show Less ↥
            CentriMo Group ↷
            Motif FoundDiscovery/​Enrichment Program 
            E-value 
            Known or Similar Motifs 
            Distribution 
            SpaMo & FIMO 
            CentriMo4.6e-022NDD1
              Reverse Complement ⇆
              Motif FoundDiscovery/​Enrichment Program 
              E-value 
              Known or Similar Motifs 
              Distribution 
              SpaMo & FIMO 
              CentriMo1.8e-018MSN4
                Reverse Complement ⇆Show 6 More ↧Show Less ↥
                CentriMo Group ↷
                Motif FoundDiscovery/​Enrichment Program 
                E-value 
                Known or Similar Motifs 
                Distribution 
                SpaMo & FIMO 
                CentriMo2.3e-016Aft1p (Aft1p&consensus=RGGTGYa)
                  Reverse Complement ⇆Show 7 More ↧Show Less ↥
                  CentriMo Group ↷
                  Motif FoundDiscovery/​Enrichment Program 
                  E-value 
                  Known or Similar Motifs 
                  Distribution 
                  SpaMo & FIMO 
                  MEME2.6e-016RAP1
                  Rap1p (Rap1p&consensus=ACACCCRYACAY)
                  RAP1
                  Not Centrally Enriched
                  Reverse Complement ⇆Show 1 More ↧Show Less ↥
                  Motif FoundDiscovery/​Enrichment Program 
                  E-value 
                  Known or Similar Motifs 
                  Distribution 
                  SpaMo & FIMO 
                  CentriMo2.9e-015OPI1
                    Reverse Complement ⇆
                    Motif FoundDiscovery/​Enrichment Program 
                    E-value 
                    Known or Similar Motifs 
                    Distribution 
                    SpaMo & FIMO 
                    CentriMo9.0e-015Zap1p (Zap1p&consensus=aTAACC)
                      Reverse Complement ⇆
                      Motif FoundDiscovery/​Enrichment Program 
                      E-value 
                      Known or Similar Motifs 
                      Distribution 
                      SpaMo & FIMO 
                      CentriMo1.2e-013
                        Reverse Complement ⇆Show 2 More ↧Show Less ↥
                        CentriMo Group ↷
                        Motif FoundDiscovery/​Enrichment Program 
                        E-value 
                        Known or Similar Motifs 
                        Distribution 
                        SpaMo & FIMO 
                        CentriMo1.6e-013Mot3p (Mot3p&consensus=TAGGAT)
                          Reverse Complement ⇆
                          Motif FoundDiscovery/​Enrichment Program 
                          E-value 
                          Known or Similar Motifs 
                          Distribution 
                          SpaMo & FIMO 
                          CentriMo4.1e-011Yap3p (Yap3p&consensus=agGTAATT)
                            Reverse Complement ⇆Show 1 More ↧Show Less ↥
                            CentriMo Group ↷
                            Motif FoundDiscovery/​Enrichment Program 
                            E-value 
                            Known or Similar Motifs 
                            Distribution 
                            SpaMo & FIMO 
                            CentriMo1.2e-008TEC1
                              Reverse Complement ⇆Show 1 More ↧Show Less ↥
                              CentriMo Group ↷
                              Motif FoundDiscovery/​Enrichment Program 
                              E-value 
                              Known or Similar Motifs 
                              Distribution 
                              SpaMo & FIMO 
                              CentriMo3.5e-007Hsf1p (Hsf1p&consensus=NGAANNTTCN)
                                Reverse Complement ⇆Show 1 More ↧Show Less ↥
                                CentriMo Group ↷
                                Motif FoundDiscovery/​Enrichment Program 
                                E-value 
                                Known or Similar Motifs 
                                Distribution 
                                SpaMo & FIMO 
                                CentriMo7.9e-007PHD1
                                  Reverse Complement ⇆Show 1 More ↧Show Less ↥
                                  CentriMo Group ↷
                                  Motif FoundDiscovery/​Enrichment Program 
                                  E-value 
                                  Known or Similar Motifs 
                                  Distribution 
                                  SpaMo & FIMO 
                                  CentriMo1.7e-006Gat1p (Gat1p&consensus=cVcGATAAGVaDa)
                                    Reverse Complement ⇆Show 7 More ↧Show Less ↥
                                    CentriMo Group ↷
                                    Motif FoundDiscovery/​Enrichment Program 
                                    E-value 
                                    Known or Similar Motifs 
                                    Distribution 
                                    SpaMo & FIMO 
                                    CentriMo1.4e-004Nrg1 (UP00270_1)
                                      Reverse Complement ⇆
                                      Motif FoundDiscovery/​Enrichment Program 
                                      E-value 
                                      Known or Similar Motifs 
                                      Distribution 
                                      SpaMo & FIMO 
                                      CentriMo2.1e-004Rap1p (Rap1p&consensus=gggxxggGA)
                                        Reverse Complement ⇆Show 1 More ↧Show Less ↥
                                        CentriMo Group ↷
                                        Motif FoundDiscovery/​Enrichment Program 
                                        E-value 
                                        Known or Similar Motifs 
                                        Distribution 
                                        SpaMo & FIMO 
                                        CentriMo2.9e-004RME1
                                          Reverse Complement ⇆
                                          Motif FoundDiscovery/​Enrichment Program 
                                          E-value 
                                          Known or Similar Motifs 
                                          Distribution 
                                          SpaMo & FIMO 
                                          CentriMo3.3e-002Upc2p (Upc2p&consensus=TCGTWCC)
                                            Reverse Complement ⇆

                                            Programs

                                            CommandRunning TimeStatusOutputs
                                            getsize GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa 1> $metrics
                                            0.05sSuccess
                                            fasta-most -min 50 < GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa 1> $metrics
                                            0.06sSuccess
                                            fasta-center -dna -len 100 < GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa 1> GSM2679374-150313_ACH11-150202_KOH_meme-chip/seqs-centered
                                            0.12sSuccess
                                            fasta-get-markov -nostatus -nosummary -dna -m 2 GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/background
                                            0.05sSuccess
                                            meme GSM2679374-150313_ACH11-150202_KOH_meme-chip/seqs-centered -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 15 -bfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -dna -searchsize 100000 -p 24 -revcomp -nostatus
                                            54.11sSuccess
                                            streme --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out -dna --p GSM2679374-150313_ACH11-150202_KOH_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000
                                            12.42sSuccess
                                            centrimo -seqlen 400 -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/centrimo_out -bfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -score 5.0 -ethresh 10.0 GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/yeast_uniprobe_GR09.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/YEASTRACT_20130918.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/macisaac_yeast.v1.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/SwissRegulon_s_cer.meme
                                            11.33sWarnings
                                            tomtom -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/yeast_uniprobe_GR09.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/YEASTRACT_20130918.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/macisaac_yeast.v1.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/SwissRegulon_s_cer.meme
                                            4.11sSuccess
                                            tomtom -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_tomtom_out -min-overlap 5 -dist pearson -evalue -thresh 1 -no-ssc GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/yeast_uniprobe_GR09.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/YEASTRACT_20130918.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/macisaac_yeast.v1.meme /sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/SwissRegulon_s_cer.meme
                                            3.71sSuccess
                                            tomtom -verbosity 1 -text -thresh 0.1 GSM2679374-150313_ACH11-150202_KOH_meme-chip/combined.meme GSM2679374-150313_ACH11-150202_KOH_meme-chip/combined.meme 1> GSM2679374-150313_ACH11-150202_KOH_meme-chip/motif_alignment.txt
                                            3.27sSuccess
                                            spamo -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/spamo_out_1 -bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -keepprimary -primary TCHTCWTCTTCHTC GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml
                                            0.62sSuccess
                                            spamo -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/spamo_out_2 -bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -keepprimary -primary 2-CCTTTA GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml
                                            0.28sSuccess
                                            spamo -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/spamo_out_3 -bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -keepprimary -primary 5-AAAAGGTTCAACA GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml
                                            0.38sSuccess
                                            spamo -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/spamo_out_4 -bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -keepprimary -primary 4-AGAGGTAGDG GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml
                                            0.44sSuccess
                                            spamo -verbosity 1 -oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/spamo_out_5 -bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background -keepprimary -primary CACCCACACCCACAC GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml
                                            0.35sSuccess
                                            fimo --parse-genomic-coord --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/fimo_out_1 --bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background --motif TCHTCWTCTTCHTC GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa
                                            0.59sSuccess
                                            fimo --parse-genomic-coord --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/fimo_out_2 --bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background --motif 2-CCTTTA GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa
                                            0.47sSuccess
                                            fimo --parse-genomic-coord --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/fimo_out_3 --bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background --motif 5-AAAAGGTTCAACA GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa
                                            0.51sSuccess
                                            fimo --parse-genomic-coord --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/fimo_out_4 --bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background --motif 4-AGAGGTAGDG GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out/streme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa
                                            0.49sSuccess
                                            fimo --parse-genomic-coord --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/fimo_out_5 --bgfile GSM2679374-150313_ACH11-150202_KOH_meme-chip/background --motif CACCCACACCCACAC GSM2679374-150313_ACH11-150202_KOH_meme-chip/meme_out/meme.xml GSM2679374-150313_ACH11-150202_KOH_meme-chip/GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa
                                            0.57sSuccess

                                            Input Files

                                            Alphabet

                                                Background source: built from the (primary) sequences

                                            Name 
                                            Bg. 
                                            Bg. 
                                            Name 
                                            Adenine0.307A~T0.307Thymine
                                            Cytosine0.193C~G0.193Guanine

                                            Primary Sequences

                                            DatabaseSourceSequence Count
                                            GSM2679374-150313 ACH11-150202 KOH.sacCer3.summits 200GSM2679374-150313_ACH11-150202_KOH.sacCer3.summits_200.fa942

                                            Motifs

                                            DatabaseSourceMotif Count
                                            yeast uniprobe GR09/sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/yeast_uniprobe_GR09.meme89
                                            YEASTRACT 20130918/sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/YEASTRACT_20130918.meme732
                                            macisaac yeast.v1/sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/macisaac_yeast.v1.meme124
                                            SwissRegulon s cer/sibcb1/wuweilab1/liangyu/meme/motif_databases/YEAST/SwissRegulon_s_cer.meme158
                                            MEME-ChIP version
                                            5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800)
                                            Reference
                                            Philip Machanick and Timothy L. Bailey, "MEME-ChIP: motif analysis of large DNA datasets", Bioinformatics 27(12):1696-1697, 2011. [full text]
                                            Command line summary