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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.2 (Release date: Sun Jan 29 10:33:12 2023 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-GAAGATGAAGA STREME-1
letter-probability matrix: alength= 4 w= 11 nsites= 152 E= 1.6e-002
 0.000364 0.000228 0.999043 0.000364
 0.777353 0.000228 0.057736 0.164683
 0.645776 0.217216 0.054480 0.082527
 0.008578 0.000228 0.990829 0.000364
 0.793815 0.000228 0.148081 0.057875
 0.244484 0.041298 0.134378 0.579841
 0.000364 0.008442 0.990829 0.000364
 0.797915 0.033084 0.078260 0.090741
 0.576603 0.123454 0.140053 0.159890
 0.041441 0.037191 0.855294 0.066075
 0.803142 0.064549 0.106322 0.025987

MOTIF 2-CCTTTA STREME-2
letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 1.2e-001
 0.027945 0.926600 0.017509 0.027945
 0.027945 0.926600 0.017509 0.027945
 0.027945 0.017509 0.017509 0.937036
 0.027945 0.017509 0.017509 0.937036
 0.027945 0.017509 0.017509 0.937036
 0.937036 0.017509 0.017509 0.027945

MOTIF 3-AAAAAATYAAAAAAA STREME-3
letter-probability matrix: alength= 4 w= 15 nsites= 37 E= 1.2e+000
 0.764563 0.043011 0.021800 0.170626
 0.913038 0.043011 0.043011 0.000941
 0.934230 0.000589 0.000589 0.064591
 0.976670 0.021800 0.000589 0.000941
 0.828195 0.085432 0.000589 0.085784
 0.849406 0.000589 0.085432 0.064573
 0.128205 0.170275 0.021800 0.679720
 0.128205 0.573297 0.000589 0.297909
 0.891827 0.000589 0.043011 0.064573
 0.934248 0.000589 0.000589 0.064573
 0.764563 0.212697 0.000589 0.022151
 0.764563 0.043011 0.000589 0.191837
 0.785773 0.000589 0.043011 0.170626
 0.594859 0.212697 0.149082 0.043362
 0.764545 0.000589 0.000589 0.234277

MOTIF 4-AGAGGTAGDG STREME-4
letter-probability matrix: alength= 4 w= 10 nsites= 57 E= 1.9e+000
 0.915707 0.000519 0.082947 0.000828
 0.019495 0.037854 0.941823 0.000828
 0.680773 0.187209 0.000519 0.131500
 0.000828 0.056521 0.904488 0.038163
 0.056846 0.000519 0.904473 0.038163
 0.075513 0.131207 0.056521 0.736759
 0.785051 0.019186 0.194935 0.000828
 0.038163 0.056537 0.848454 0.056846
 0.206201 0.131191 0.344386 0.318222
 0.075545 0.019186 0.867106 0.038163

MOTIF 5-AAAAGGTTCAACA STREME-5
letter-probability matrix: alength= 4 w= 13 nsites= 64 E= 2.5e+000
 0.844153 0.000710 0.128459 0.026678
 0.869720 0.000710 0.051801 0.077769
 0.639790 0.230640 0.000710 0.128860
 0.767539 0.000710 0.026255 0.205496
 0.052224 0.000710 0.945934 0.001133
 0.052224 0.000710 0.945934 0.001133
 0.128860 0.000710 0.000710 0.869720
 0.128860 0.000710 0.179528 0.690903
 0.077769 0.920388 0.000710 0.001133
 0.741972 0.000710 0.154004 0.103315
 0.588699 0.128437 0.179528 0.103336
 0.154405 0.716003 0.051801 0.077791
 0.690903 0.077346 0.128437 0.103315

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc GSM2679374-150313_ACH11-150202_KOH_meme-chip/streme_out -dna --p GSM2679374-150313_ACH11-150202_KOH_meme-chip/seqs-centered --minw 6 --maxw 15 --order 2 --thresh 0.05 --totallength 4000000
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CPU:		fnode007.sibcb.ac.cn
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FINALTIME:	12.39 seconds
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