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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
GSE171969
PMID:
35354807
Technique Type:
CPD-seq
Publication:
Pervasive Transcription-coupled DNA repair in E. coli
First Author:
Britney Martinez
Last Author:
Evgeny Nudler
Year:
2022
Journal:
Nature Communications
Access Link:
Samples ( 48 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| GSM5239085-wt_1_60J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239086-wt_1_60J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239087-wt_1_60J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239088-wt_1_60J_30min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239089-rho15_NT | / | Escherichia coli | NT | rho15 | / | / | / | CPD-seq | |
| GSM5239090-rho15_0min | / | Escherichia coli | / | rho15 | / | / | / | CPD-seq | |
| GSM5239091-rho15_20min | / | Escherichia coli | / | rho15 | / | / | / | CPD-seq | |
| GSM5239092-wt_240J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239093-wt_240J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239094-wt_240J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239095-wt_2_60J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239096-wt_2_60J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239097-wt_2_60J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239098-wt_2_rif_60J_NT | / | Escherichia coli | UV (254 nm) + Rifampicin | WT | / | / | / | CPD-seq | |
| GSM5239099-wt_2_rif_60J_0min | / | Escherichia coli | UV (254 nm) + Rifampicin | WT | / | / | / | CPD-seq | |
| GSM5239100-wt_2_rif_60J_20min | / | Escherichia coli | UV (254 nm) + Rifampicin | WT | / | / | / | CPD-seq | |
| GSM5239101-uvra_60J_NT | / | Escherichia coli | UV (254 nm) | uvraΔ | / | / | / | CPD-seq | |
| GSM5239102-uvra_60J_0min | / | Escherichia coli | UV (254 nm) | uvraΔ | / | / | / | CPD-seq | |
| GSM5239103-uvra_60J_20min | / | Escherichia coli | UV (254 nm) | uvraΔ | / | / | / | CPD-seq | |
| GSM5239104-uvrd_60J_NT | / | Escherichia coli | UV (254 nm) | uvrdΔ | / | / | / | CPD-seq | |
| GSM5239105-uvrd_60J_0min | / | Escherichia coli | UV (254 nm) | uvrdΔ | / | / | / | CPD-seq | |
| GSM5239106-uvrd_60J_20min | / | Escherichia coli | UV (254 nm) | uvrdΔ | / | / | / | CPD-seq | |
| GSM5239107-wt_3_60J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239108-wt_3_60J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239109-wt_3_60J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239110-lexa_60J_NT | / | Escherichia coli | UV (254 nm) | lexa3 | / | / | / | CPD-seq | |
| GSM5239111-lexa_60J_0min | / | Escherichia coli | UV (254 nm) | lexa3 | / | / | / | CPD-seq | |
| GSM5239112-lexa_60J_20min | / | Escherichia coli | UV (254 nm) | lexa3 | / | / | / | CPD-seq | |
| GSM5239113-wt_4_60J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239114-wt_4_60J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239115-wt_4_60J_10min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239116-wt_4_60J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239117-wt_4_60J_30min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239118-mfd_60J_NT | / | Escherichia coli | UV (254 nm) | mfdΔ | / | / | / | CPD-seq | |
| GSM5239119-mfd_60J_0min | / | Escherichia coli | UV (254 nm) | mfdΔ | / | / | / | CPD-seq | |
| GSM5239120-mfd_60J_20min | / | Escherichia coli | UV (254 nm) | mfdΔ | / | / | / | CPD-seq | |
| GSM5239121-mfd_rif_60J_NT | / | Escherichia coli | UV (254 nm) + Rifampicin | mfdΔ | / | / | / | CPD-seq | |
| GSM5239122-mfd_rif_60J_0min | / | Escherichia coli | UV (254 nm) + Rifampicin | mfdΔ | / | / | / | CPD-seq | |
| GSM5239123-mfd_rif_60J_20min | / | Escherichia coli | UV (254 nm) + Rifampicin | mfdΔ | / | / | / | CPD-seq | |
| GSM5239124-wt_5_60J_NT | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239125-wt_5_60J_0min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239126-wt_5_60J_20min | / | Escherichia coli | UV (254 nm) | WT | / | / | / | CPD-seq | |
| GSM5239127-D210G_60J_NT | / | Escherichia coli | UV (254 nm) | rho-D210G | / | / | / | CPD-seq | |
| GSM5239128-D210G_60J_0min | / | Escherichia coli | UV (254 nm) | rho-D210G | / | / | / | CPD-seq | |
| GSM5239129-D210G_60J_20min | / | Escherichia coli | UV (254 nm) | rho-D210G | / | / | / | CPD-seq | |
| GSM5239130-L187R_60J_NT | / | Escherichia coli | UV (254 nm) | rho-L187R | / | / | / | CPD-seq | |
| GSM5239131-L187R_60J_0min | / | Escherichia coli | UV (254 nm) | rho-L187R | / | / | / | CPD-seq | |
| GSM5239132-L187R_60J_20min | / | Escherichia coli | UV (254 nm) | rho-L187R | / | / | / | CPD-seq |
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