Technique

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Total Page: 4 Total entries: 69

Technique	Publication	Journal	Targets	Class
XR-seq	Genome-wide mapping of nucleotide excision repair with XR-seq	Nature Protocols	bulky DNA adducts	DNA damage
tXR-seq	Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene	PNAS	bulky DNA adducts	DNA damage
ATL-XR-seq	A new technique for genome-wide mapping of nucleotide excision repair without immunopurification of damaged DNA	Journal of Biological Chemistry	bulky DNA adducts	DNA damage
OG-seq	Sequencing the mouse genome for the oxidatively modified base 8-oxo-7,8-dihydroguanine by OG-Seq	Journal of American Chemical Society	8-oxodG	DNA damage
U-DNA-seq	Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments	eLife	dU	DNA damage
OxiDIP-Seq	Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells	Nucleic Acids Research	8-oxodG	DNA damage
CLAPS-seq	Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites	Nucleic Acids Research	8-oxodG	DNA damage
Damage-seq	Cisplatin DNA damage and repair maps of the human genome at single-nucleotide resolution	PNAS	bulky DNA adducts (cisplatin crosslink)	DNA damage
HS-Damage-seq	Dynamic maps of UV damage formation and repair for the human genome	PNAS	bulky DNA adducts (UV crosslink)	DNA damage
Ucaps-seq	UdgX-Mediated Uracil Sequencing at Single-Nucleotide Resolution	Journal of American Chemical Society	dU	DNA damage
BrITL	Genome-wide identification of structure-forming repeats as principal sites of fork collapse upon ATR inhibition	Molecular Cell	DSB	DNA damage
DSB-seq	DNA break mapping reveals topoisomerase II activity genome-wide	International Journal of Molecular Sciences	DSB	DNA damage
GLOE-Seq	Genome-wide Nucleotide-Resolution Mapping of DNA Replication Patterns, Single-Strand Breaks, and Lesions by GLOE-Seq	Molecular Cell	SSB	DNA damage
SSiNGLe	Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells	Nature Communications	SSB	DNA damage
SSiNGLe-AP	Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method	Nature Communications	AP site	DNA damage
TrAEL-seq	Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq	Plos Biology	DSB	DNA damage
DENT-seq	DENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single-nucleotide resolution	Genome Research	SSB	DNA damage
END-seq	DNA Breaks and End Resection Measured Genome-wide by End Sequencing	Molecular Cell	DSB	DNA damage
BLESS	Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing	Nature Methods	DSB	DNA damage
i-BLESS	High-resolution, ultrasensitive and quantitative DNA double-strand break labeling in eukaryotic cells using i-BLESS	Nature Protocols	DSB	DNA damage

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