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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
PRJNA419220
PMID:
31127121
Technique Type:
qDSB-seq
Publication:
qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing
First Author:
Yingjie Zhu
Last Author:
Maga Rowicka
Year:
2019
Journal:
Nature Communications
Access Link:
Samples ( 14 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| SRX5576738-wt_NotI_SrfI_AsiSI_1_1_250U | / | Saccharomyces cerevisiae | / | WT | / | / | NotI; SrfI; AsiSI | qDSB-seq | |
| SRX5576739-wt_NotI_SrfI_AsiSI_250_250_250U | / | Saccharomyces cerevisiae | / | WT | / | / | NotI; SrfI; AsiSI | qDSB-seq | |
| SRX5576746-wt_S_HU_1h | / | Saccharomyces cerevisiae | Hydroxyurea | WT | / | S | / | qDSB-seq | |
| SRX5576747-wt_S_45min | / | Saccharomyces cerevisiae | / | / | / | S | / | qDSB-seq | |
| SRX5576748-wt_S_CPT_45min | / | Saccharomyces cerevisiae | Camptothecin | WT | / | S | / | qDSB-seq | |
| SRX5576749-wt_S_Rec_2h | / | Saccharomyces cerevisiae | recovery from Hydroxyurea | / | / | S | / | qDSB-seq | |
| SRX5576750-pif1_S_1 | pif1-m2 cell | Saccharomyces cerevisiae | / | pif1-m2 | / | S | / | qDSB-seq | |
| SRX5576751-wt_G1_ZEO | / | Saccharomyces cerevisiae | Zeocin | WT | / | G1 | / | qDSB-seq | |
| SRX5576752-pif1_S_3 | pif1-m2 cell | Saccharomyces cerevisiae | / | pif1-m2 | / | S | / | qDSB-seq | |
| SRX5576753-pif1_S_2 | pif1-m2 cell | Saccharomyces cerevisiae | / | pif1-m2 | / | S | / | qDSB-seq | |
| SRX5576754-sml1_S | / | Saccharomyces cerevisiae | / | / | / | S | / | qDSB-seq | |
| SRX5576755-sml1_G1 | / | Saccharomyces cerevisiae | / | / | / | G1 | / | qDSB-seq | |
| SRX5576760-U2OS_DIvA_AsiSI_plus-4OHT | DiVA | Homo sapiens | 4-Hydroxytamoxifen + Auxin | / | / | / | AsiSI | qDSB-seq | |
| SRX5576761-U2OS_DIvA_AsiSI_minus-4OHT | DiVA | Homo sapiens | / | / | / | / | AsiSI | qDSB-seq |
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