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DNA Damage Atlas |
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DNA Damage Atlas |
Basic Information
Dataset ID:
PRJNA448166
PMID:
31431505
Technique Type:
UPD-seq
Publication:
Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencingUracil-DNA pulldown and sequencing
First Author:
RaminSakhtemani
Last Author:
Ashok S.Bhagwat
Year:
2019
Journal:
Journal of Biological Chemistry
Access Link:
Samples ( 16 )
| Sample Name | Cell Line/Tissue | Organism | Treatment | Genotype | In-situ Treatment | Cell Phase | Bait/Targeted Break | Technique | fastqc |
| SRX3868764-A5_CJ_PD_PhU | / | Escherichia coli | / | ung- dut- | / | / | / | UPD-seq | |
| SRX3868765-A4_CJ_PD_Taq | / | Escherichia coli | / | ung- dut- | / | / | / | UPD-seq | |
| SRX3868766-A3_CJ_PD_RpliG_Dpo4 | / | Escherichia coli | / | ung- dut- | / | / | / | UPD-seq | |
| SRX3870944-F2_BH212_A3A_PD_Taq | / | Escherichia coli | / | WT A3A | / | / | / | UPD-seq | |
| SRX3870945-F1_BH212_EVUI_PD_Taq | / | Escherichia coli | / | empty vector(uninduced) | / | / | / | UPD-seq | |
| SRX3870948-S4_BH212_A3A_PD_Taq | / | Escherichia coli | / | WT A3A | / | / | / | UPD-seq | |
| SRX3870949-S3_BH212_EVUI_PD_Taq | / | Escherichia coli | / | empty vector(uninduced) | / | / | / | UPD-seq | |
| SRX3870950-F3_BH212_A3Amut_PD_Taq | / | Escherichia coli | / | mutant A3A | / | / | / | UPD-seq | |
| SRX3871207-F6_BH214_A3A_PD_Taq | / | Escherichia coli | / | WT A3A | / | / | / | UPD-seq | |
| SRX3871208-F7_BH214_A3Amut_PD_Taq | / | Escherichia coli | / | mutant A3A | / | / | / | UPD-seq | |
| SRX3871209-F8_BH214_EVI_PD_Taq | / | Escherichia coli | / | empty vector(induced) | / | / | / | UPD-seq | |
| SRX3871210-F9_BH214_EVUI_PD_Taq | / | Escherichia coli | / | empty vector(uninduced) | / | / | / | UPD-seq | |
| SRX6618437-H3_BH214_EVI_PD_Taq | / | Escherichia coli | / | empty vector(induced) | / | / | / | UPD-seq | |
| SRX6618438-H4_BH214_EVUI_PD_Taq | / | Escherichia coli | / | empty vector(uninduced) | / | / | / | UPD-seq | |
| SRX6618439-H1_BH214_A3A_PD_Taq | / | Escherichia coli | / | WT A3A | / | / | / | UPD-seq | |
| SRX6618440-H2_BH214_A3AE72A_PD_Taq | / | Escherichia coli | / | mutant A3A-E72A | / | / | / | UPD-seq |
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