DNA Damage Atlas

ERX177105-Rad51_2_ChIP

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

ERR202417


Source Project ID:   

E-MTAB-1241

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

4hrs


Treatment Dose:   

300nM


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-RAD51)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/1116.59/
chr172094630220946305/837.445/
chr178025084280250845/837.445/
chr18945859889458601/837.445/
chr56846285268462855/837.445/
chr747221314722134/837.445/
chr1759739645973967/558.297/
chr176185085761850860/558.297/
chr1924559942455997/558.297/
chr197118679711870/558.297/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/880.515/
chr178025084280250845/541.924/
chr18945859889458601/485.062/
chr213324552033245523/459.212/
chr747221314722134/456.631/
chr56846285268462855/447.154/
chr1759739645973967/402.35/
chr1924559942455997/383.396/
chr197118679711870/364.442/
chr1110036701110036704/310.161/
Download the Full Merged Peak List


Visualization

Manual





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