DNA Damage Atlas

ERX1892462-BLESS_G1_Auxin_p

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

ERR1830486


Source Project ID:   

PRJEB14415

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen + Auxin


Treatment Time:   

4hrs + 2hrs


Treatment Dose:   

300nM 4-hydroxytamoxifen + 500ug/mL Auxin


Cell Phase:   

G1


Targeted break:   

AsiSI


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 1000


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.860607


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr194249785742497860/1036.34/
chr175718429857184301/690.896/
chr39953696699536969/690.896/
chr1167790128167790131/518.172/
chr178025084280250845/518.172/
chr203736027037360273/518.172/
chr69034818890348191/518.172/
chr109405101694051019/345.448/
chr12121975059121975062/345.448/
chr13114894660114894663/345.448/
Download the Full Peak List


Visualization

Manual





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