Sample Detail

DNA Damage Atlas

ERX5847551-ChIP_SSDS_DMC1_MUT_C

Basic Information

Manual

Sample ID:

ERR6212449

Source Project ID:

Cell Type:

Testis

Organism:

Mus musculus

Strain:

C57BL/6J

Genotype:

Top6bl^{Δ17Ct/Δ17Ct}

Layout:

PAIRED

Instrument model:

Illumina HiSeq 2500

Technique:

ChIP-seq (anti-DMC1)

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chrX	36932113	36932838	36932384	71.4012	+
chr15	7949671	7949956	7949674	64.8695	-
chrX	73018332	73018700	73018630	50.2386	+
chr6	146810931	146811321	146810971	47.4046	+
chr1	177355901	177356231	177355974	44.8189	-
chr16	11603896	11604333	11604113	42.3062	-
chr9	23460603	23460955	23460848	42.0177	+
chrX	51838936	51839306	51839077	39.9736	-
chr11	51196704	51197092	51196729	38.1192	-
chrX	8014485	8015556	8015047	37.9768	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	36932113	36932838	36932384	71.4012	+
chr11	51196704	51196964	51196729	56.8856	-
chr16	11603896	11604248	11604113	52.5222	-
chrX	73018332	73018698	73018630	50.5131	+
chr6	146810931	146811319	146810971	47.649	+
chr4	136426594	136427037	136426921	45.9065	+
chr17	47446442	47447267	47446928	40.337	-
chrX	51838936	51839306	51839077	39.9736	-
chrX	8014487	8015556	8015047	38.0479	+
chrX	166536194	166536584	166536422	37.9237	-

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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