DNA Damage Atlas

GSM1174376-WT_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR922178,SRR922179,SRR922180,SRR922181


Source Project ID:   

GSE48299

Organism:   

Saccharomyces cerevisiae


Genotype:   

WT


Harvested Time:   

5 hr in meiosis


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-PrA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI9464696678959552451.29+
chrXIV4265534280714270532364.5-
chrVIII5160055180375173472238.82-
chrII6420206434666428992133.37+
chrX4657204676834664141744.79+
chrIV8347168368968358781722.53+
chrVII8480338495598487521706.75-
chrXV2181772196292188541523.98+
chrX4677654700954691001520.27-
chrX7047177060887053121397.33+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI9466096678959552479.41+
chrVIII5160275180375173472215.95-
chrXIV4265534280674270532193.56-
chrII6420206434666428992036.2+
chrX4677834700954691001787.45-
chrX4657214676264664141752.99+
chrVII8480338495588487521636.67-
chrIV8347168368808358781609.47+
chrIV1979861991851985831394.4+
chrVII6089216109116101611368.38-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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