DNA Damage Atlas

GSM1174377-zip3_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR922182


Source Project ID:   

GSE48299

Organism:   

Saccharomyces cerevisiae


Genotype:   

zip3Δ


Harvested Time:   

5 hr in meiosis


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-PrA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV5502945519605510672002.37-
chrXIV4263254280194270491995.79-
chrIV8347678369118361011937.39-
chrXI5755095767895761401908.47-
chrVIII5160645180135173761862.88+
chrX4657314676104664161600.86+
chrIV1979321991851986071468.01+
chrVIII1893281914221903471443.08+
chrXV2422592436012428741430.27-
chrVII6087856109136101341412.43+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV8347678369118361012193.05-
chrIV5503565519605510671935.36-
chrVIII5160645179835173761928.97+
chrXIV4264004280194270491886.91-
chrXI5755095767895761401776.39-
chrVII6087856109126101341643.57+
chrVIII1893281914221903471597.26+
chrVIII1215561230251221691557.84+
chrX7047017060617053191552.45+
chrIV1979321991851986071543.2+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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