DNA Damage Atlas

GSM1179917-C57Bl6-J_Hop2-KO_Anti-DMC1_Sample_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR924600


Source Project ID:   

GSE48493

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Hop2-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr614059018414059200214059155428.141-
chr118526692718526794618526718417.957-
chr911509911111510073511510011616.3837+
chr186217850862182418621805715.2812-
chr614286129914286211014286203214.965+
chr1189610836896126128961186013.6148-
chr1430688650306890813068885413.4297+
chr1456832240568326245683256313.1285-
chr815120808151213311512107313.0309+
chr117212861517212936017212902212.7819+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr614059068414059198514059155432.8656-
chr118526703318526758518526718423.6778-
chr911509930111510025611510011623.6573+
chr398137167981376519813743422.568+
chr310761651410761717610761681117.6281+
chr186217909862182418621805717.1532-
chr1189611755896125428961186017.0821-
chr167962231679624746796232116.5202-
chr117212861517212917417212902216.1999+
chr614286129914286205414286203215.704+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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