DNA Damage Atlas

GSM1179918-C57Bl6-J_Hop2-KO_Anti-DMC1_Sample_B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR924601 , SRR924602 , SRR924603


Source Project ID:   

GSE48493

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Hop2-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr614059068414059198514059155412.8563-
chr91150993011151002561151001169.27225+
chr107568092975681322756813156.89329+
chr11852670331852675851852671846.86105-
chr51004451751004457901004452406.77184-
chr156529937365300078652999066.65293-
chr96447323764473554644734856.42008-
chr45561081955611225556111396.3738+
chr92235352422354232223541106.33919-
chr81081102211081104491081104176.0296+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr614059068414059198514059155412.8563-
chr91150993011151002561151001169.27225+
chr156529938165300022652999067.29616-
chr107568092975681322756813156.89329+
chr11852670331852675851852671846.86105-
chr51004451751004457901004452406.77184-
chr92235354322354232223541106.51401-
chr96447323764473554644734856.42008-
chr45561081955611225556111396.3738+
chr106592760465927832659277016.0296-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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