DNA Damage Atlas

GSM1179919-Spo11_Gal--_Anti-DMC1_Sample_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR924604


Source Project ID:   

GSE48493

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11Gal/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1041255862412560654125603916.6172-
chr398136798981380509813743412.2142+
chr815120829151212841512107312.1092+
chr1622805087228055262280538511.2699-
chr1210906124510906233310906194710.9549-
chr1747446050474470534744692810.8743-
chr1746538000465387974653856610.8634-
chr1183585386835863458358590410.787+
chr446545445465458354654572110.6676+
chr649116884491175594911716310.6612+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab