DNA Damage Atlas

GSM1179920-Spo11_Gal-Gal_Anti-DMC1_Sample_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR924605


Source Project ID:   

GSE48493

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11Gal/Gal


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1210906101110906237410906194722.4943-
chr1216643135166449411664407416.0831+
chr398136396981395649813743415.7903+
chr1170608606706110677060977814.8625+
chr413721645713721841113721724414.0391+
chr523856919238599352385813413.8218+
chr1189610561896131098961186013.7217-
chr611922513111922640211922589813.5425+
chr1746537450465399234653856613.2678-
chr1476424905764274967642621412.8712+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1210906101110906237410906194722.4943-
chr398136396981390159813743418.6896+
chr387758004877603138775901417.7045-
chr1216643135166449411664407416.0831+
chr1746537450465395844653856614.8714-
chr1170608607706110677060977814.8685+
chr523856919238596802385813414.8061+
chr1731471289314733143147236614.0781+
chr413721645713721841013721724414.0463+
chr1189610561896131098961186013.7217-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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