DNA Damage Atlas


GSM1179920-Spo11_Gal-Gal_Anti-DMC1_Sample_A




Basic Information

Manual

Sample ID:   

SRR924605


Source Project ID:   

GSE48493

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11Gal/Gal


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1210906101110906237410906194722.4943-
chr1216643135166449411664407416.0831+
chr398136396981395649813743415.7903+
chr1170608606706110677060977814.8625+
chr413721645713721841113721724414.0391+
chr523856919238599352385813413.8218+
chr1189610561896131098961186013.7217-
chr611922513111922640211922589813.5425+
chr1746537450465399234653856613.2678-
chr1476424905764274967642621412.8712+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1210906101110906237410906194722.4943-
chr398136396981390159813743418.6896+
chr387758004877603138775901417.7045-
chr1216643135166449411664407416.0831+
chr1746537450465395844653856614.8714-
chr1170608607706110677060977814.8685+
chr523856919238596802385813414.8061+
chr1731471289314733143147236614.0781+
chr413721645713721841013721724414.0463+
chr1189610561896131098961186013.7217-
Download the Full Merged Peak List



Motif Analysis

Manual





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