DNA Damage Atlas

GSM1243340-CPD_Beseq_replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1015387


Source Project ID:   

GSE51361

Organism:   

Saccharomyces cerevisiae


Strain:   

MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0 bar1Δ::LEU2


Cell Phase:   

S


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

Excision-seq


Others:   

enzyme treatment: UVDE-lab generated and E.coli CPD from Dr. Zhong


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4596884606744602177917.79/
chrXV427895428145428027416.786/
chrXII489516489726489609377.243/
chrXII252768252993252892367.162/
chrM792427999979760348.738/
chrVII625238625524625400339.825/
chrXV988243988489988369335.818/
chrII278842813528000333.631/
chrM737387434973965331.266/
chrVII413333413546413465330.545/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4596924606744602177950.04/
chrM794027991879760395.102/
chrM737817434973965345.401/
chrM618096201461849337.38/
chrM606176096960955301.792/
chrM151551536215225294.266/
chrM415374171041631293.307/
chrM263942661426510254.276/
chrM596105989759743226.417/
chrM748357537575097221/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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