DNA Damage Atlas


GSM1243347-Afu_UDG_Predigestion_Beseq_replicate_2_BG234




Basic Information

Manual

Sample ID:   

SRR1015394


Source Project ID:   

GSE51361

Organism:   

Saccharomyces cerevisiae


Strain:   

MATa leu2-3-112 trp1-289 his7-2 ura3-52 lys1-1 ade2Δ dut1-1 ung1Δ::URA3 bar1Δ::kanMX hENt::LEU


Cell Phase:   

S


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

Excision-seq


Others:   

enzyme treatment: UDG-New England Biolabs, yeast strain from Dr. S. Boiteux


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4598144606024601363712.19/
chrIV887361887561887456376.655/
chrIV884966886825886169275.036/
chrIII204658204875204803231.206/
chrXVI435130435346435177219.159/
chrIV906402906609906422215.235/
chrIII197852198152197992210.555/
chrII382843852438386209.66/
chrI184044184244184064207.136/
chrIV757016757223757088201.547/
Download the Full Peak List



Motif Analysis

Manual





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