DNA Damage Atlas


GSM1243348-E_coli_UDG_Predigestion_Beseq_normalized




Basic Information

Manual

Sample ID:   

SRR1015395


Source Project ID:   

GSE51361

Organism:   

Escherichia coli


Strain:   

CJ236: FΔ(HindIII)::cat (Tra+ Pil+ CamR)/ ung-1 relA1 dut-1 thi-1 spoT1 mcrA


Cell Phase:   

S


Layout:   

SINGLE


Instrument model:   

Illumina Genome Analyzer II


Technique:   

Excision-seq


Others:   

enzyme treatment: CJ236 from New England Biolabs


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2758582275878927586881144.45/
chr2104867210515021050331032.33/
chr2991418299171029915371015.43/
chr380250638028173802645965.662/
chr447385444752154474437943.498/
chr299198429922242992107933.054/
chr453873245389324538838925.699/
chr298516829854702985303907.481/
chr435055843509214350755905.981/
chr275823827585312758292900.396/
Download the Full Peak List



Motif Analysis

Manual





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