DNA Damage Atlas

GSM1300042-IgH_Tcells19

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1067704


Source Project ID:   

GSE53755

Cell Type:   

Activated splenic T cell


Organism:   

Mus musculus


Genotype:   

IgH2-28xI


Targeted break:   

Sγ1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113338695113342757113338826128692+
chr1211342606711343008411342630565364.7+
chr1211332775211333081211333007914866.3-
chr61223062031223064081223062037786.19+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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