DNA Damage Atlas

GSM1378455-Cas9_RAG1D_SRep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1270084


Source Project ID:   

GSE57283

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9n:RAG1D


Treatment Time:   

48hrs


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51194830481194832591194830551119.35+
chr22507451115074531350745111701.534+
chr13100620853100621065100621053668.443-
chr11783497157834991678349715470.016+
chr12543833595438356054383559470.016-
chr17796476207964782179647620470.016+
chr8135315489135315690135315689470.016-
chr8139161936139162137139161936470.016+
chr11976068159760701797607015467.69-
chr12196270831962728519627083467.69+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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