DNA Damage Atlas

GSM1414765-WT-aCD40-IL4-Rep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1423996


Source Project ID:   

GSE58599

Cell Type:   

Splenic IgM+ B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

anti-CD40/IL4


Genotype:   

WT


Targeted break:   

c-myc intron one


Layout:   

SINGLE


Instrument model:   

454 GS FLX Titanium


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr121134250481134261981134250486326.82+
chr121132754781132767151132754783286.91+
chr121133361291133375021133363293273.05-
chr68775768987757897877576972057.65+
chr156081386360814072608138632047.8+
chr156588784865888063658878481990.65+
chr158190472881904943819049281990.65-
chr44496875744968972449687721990.65+
chr41918129219181508191814921981.44-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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