DNA Damage Atlas


GSM1414767-ATM-aCD40-IL4-Rep2




Basic Information

Manual

Sample ID:   

SRR1423998


Source Project ID:   

GSE58599

Cell Type:   

Splenic IgM+ B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

anti-CD40/IL4


Genotype:   

ATM-/-


Targeted break:   

c-myc intron one


Layout:   

SINGLE


Instrument model:   

454 GS FLX Titanium


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr159029918590299386902993863533.89-
chr121134251771134269931134252622672.79+
chr121133365221133378141133367222657.25-
chr156197371461974557619739782387.37+
chr11358550681358553071358550681981.34+
chr121132746651132772301132748651707.7-
chr156395074463950959639507441651.89+
chr44493528744935503449352871644.24+
chr144547692845477371454771281603.41-
chr194430101644301242443010161571.49+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr158190474081904939819049383015.32+
chr21558055571558060261558056911600.88-
chr194430101644301217443010161041.57+
Download the Full Merged Peak List



Motif Analysis

Manual





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