DNA Damage Atlas


GSM1414769-ATMi-aCD40-IL4-Rep1




Basic Information

Manual

Sample ID:   

SRR1424001


Source Project ID:   

GSE58599

Cell Type:   

Splenic IgM+ B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

anti-CD40/IL4 + KU55933


Treatment Time:   

ATM inhibitor


Treatment Dose:   

10uM KU55933


Genotype:   

WT


Targeted break:   

c-myc intron one


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr156198043661981250619807364203.6-
chr157493262874933626749326283428.59+
chr121134229331134269611134231332808.02-
chr121133348441133377381133350442463.23-
chr121132746831132772441132746832412.39+
chr156197371761974688619738792153.51+
chr172949119229492204294911922066.26+
chr71255522771255550051255524771533.03-
chr13161059631610851316107961490.95-
chr157495574374958779749560271408.81-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr156197371761974518619738796759.12+
chr121133348441133377381133350442585.19-
chr121134229331134269491134231332503.44-
chr1316105963161084431610796972.802-
chr15819047438190494381904943896.874-
chr14454769414547716245477134810.894-
chr1135855058135855344135855058735.072+
Download the Full Merged Peak List



Motif Analysis

Manual





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