DNA Damage Atlas


GSM1414771-ATMi-aCD40-IL4-Rep3




Basic Information

Manual

Sample ID:   

SRR1424003


Source Project ID:   

GSE58599

Cell Type:   

Splenic IgM+ B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

anti-CD40/IL4 + KU55933


Treatment Time:   

ATM inhibitor


Treatment Dose:   

10uM KU55933


Genotype:   

WT


Targeted break:   

c-myc intron one


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr156197369361974655619739127346.5-
chr121133339711133390081133339822077.43+
chr121134213351134272371134215351698.7-
chr15749331547493388074933354830.084-
chr15821168708211707182116870817.694+
chr15162891171628987216289317798.2-
chr7125552510125554775125552510798.2+
chr15313663553136659231366355693.488+
chr7105579125105579364105579325687.684-
chr15601416216014214160141787632.141+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr156197371761974518619739126759.12-
chr157493315474933626749333542739.55-
chr121132760161132770711132761031533.17+
chr71255525101255547751255525101228.78+
chr15819047438190494381904920896.874-
chr14454769414547716245477134810.894-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab