DNA Damage Atlas


GSM1414777-ATM-RP105-Rep3




Basic Information

Manual

Sample ID:   

SRR1424009


Source Project ID:   

GSE58599

Cell Type:   

Splenic IgM+ B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

RP105


Treatment Time:   

48hrs


Treatment Dose:   

2ug/mL


Genotype:   

ATM-/-


Targeted break:   

c-myc intron one


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr13161055631610845316107562273.25-
chr71055790831055793661055792831989.81-
chr156212252262122729621225221813.58+
chr93490766134907878349076611730+
chr156197371561974656619743651695.53+
chr158190458081905219819049421615.62-
chr156207139462071648620713941477.99+
chr156123027061230471612302701400.79+
chr155954773759547940595477371386.98+
chr141479104914791260147910491334.4+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr21558054191558060541558054581593.92-
chr144547696345477363454771071408.97-
Download the Full Merged Peak List



Motif Analysis

Manual





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