DNA Damage Atlas

GSM1447325-AA1_individual_Anti-DMC1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1528821


Source Project ID:   

GSE59836

Cell Type:   

Testis


Organism:   

Homo sapiens


Genotype:   

PRDM9A / PRDM9A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM1447326-AA1_individual_Input_DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12206156621393412.8199/
rDNA1394153214611.3868/
chr414961911498808149749911.3089/
chrX15329214015329960515329587210.3923/
chrX1521045141521104411521074779.66165/
chrX1530330171530396491530363339.51917/
chr111469767147380514717869.23744/
chr101343351171343382181343366679.1203/
chrX1536858401536934441536896428.91266/
chr168876783588770747887692918.17873/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX15368914315369085815368964226.3448
chr1013433599713433704313433666723.5225
chr484260084304584268022.4312
chr111059061106367110597622.4125
chr1114713791472384147178621.9555
chrX15329461915329686015329587221.5287
chr414970951498180149749920.7402
rDNA14642339214619.6136
chr1013403754013403826113403811918.4594
chrX35903666359039393590370517.3197
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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