DNA Damage Atlas

GSM1447328-AA2_individual_Anti-DMC1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1528830 , SRR1528831


Source Project ID:   

GSE59836

Cell Type:   

Testis


Organism:   

Homo sapiens


Genotype:   

PRDM9A / PRDM9A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM1447329-AA2_individual_Input_DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX1536876201536922941536899576.81939/
chrX1532934761532985561532960166.4924/
chr41495779149894314973616.37884/
chr101343349651343383161343366405.88821/
chr42303711230780823057595.82734/
chr41623270162665816249645.64229/
chr41787124179047817888015.13688/
chr11023944102734110256425.12016/
chr196507266543936525595.06758/
chr48411318443768427535.0566/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr484260084304584275317.4227
chr1013433599713433704313433664015.9616
chrX15368914315369085815368995714.4951
chr423051312306477230575913.4707
chr414970951498180149736113.4218
chr1311327824411327883611327862712.4728
chr1660174960299460238512.0594
chr437258043726296372622011.923
chr913949323313949411113949349811.8673
chrX15329461915329686015329601611.6054
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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