DNA Damage Atlas

GSM1447331-AB1_individual_Anti-DMC1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1528839 , SRR1528840


Source Project ID:   

GSE59836

Cell Type:   

Testis


Organism:   

Homo sapiens


Genotype:   

PRDM9A / PRDM9B


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM1447332-AB1_individual_Input_DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random3355235367344596.96183/
chrX1532916581532992141532954366.39888/
chrX1536862541536930521536896536.31357/
chrX1530332071530395791530363936.30957/
chr41786876179095017889136.30563/
chrX1542833181542879401542856295.76136/
chr196507506547266527385.67312/
rDNA1216915768139685.60003/
chr56677346712766695055.51325/
chrX1521040711521076591521058655.35525/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX15368914315369085815368965317.2625
chr566924467029066950514.5759
chrX14788722614788813914788738313.611
chrX15329461915329686015329543612.9311
chr484260084304584297912.6721
chr319730433319730465519730436212.3237
chr414970951498180149751212.2714
chr1112416331243023124222811.8326
chrX15266063715266215615266116811.6871
chrX64808049648086406480840411.6619
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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