DNA Damage Atlas

GSM1447337-AB2_individual_Anti-DMC1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1528851 , SRR1528852 , SRR1528853


Source Project ID:   

GSE59836

Cell Type:   

Testis


Organism:   

Homo sapiens


Genotype:   

PRDM9A / PRDM9B


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA274532012973231.06/
rDNA4111079745226.736/
rDNA124771468013578216.74/
rDNA694180257483178.197/
rDNA146423391901132.958/
rDNA98571020210029109.375/
chr1936800131368005783680035476.9337/
rDNA10891115251120869.4098/
chrX14519151114519170314519160769.1402/
chrUn_gl00022011797311934711866063.1422/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA274532012973231.06
rDNA4111079745226.736
rDNA146423391901132.958
chr814494025914494086414494056130.667
chr1688599705886011658860063216.7529
chr1922505932252013225130312.661
chr319672930919673047819672989311.7135
chr1610370101037274103711611.6801
chr1410339625810339715510339670611.6529
chr1493407674934083639340801810.8471
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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