DNA Damage Atlas

GSM1447338-AC_individual_Anti-DMC1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1528854 , SRR1528855


Source Project ID:   

GSE59836

Cell Type:   

Testis


Organism:   

Homo sapiens


Genotype:   

PRDM9A / PRDM9C


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM1447339-AC_individual_Input_DNA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1110767411081976107935821.818/
chrX14993508014994231214993869620.2492/
chrX15368596115369190815368893417.9234/
chr814563725914564298714564012315.8789/
chr710905121094842109267715.0606/
chr519141421918771191645613.3876/
chrX15329349315329859415329604313.3824/
chrX15210430815210953515210692113.3151/
chrX15373039915373698115373369012.6599/
chr1128186928620528403712.6211/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr913949323313949411113949348238.8744
chr1128401428533328403734.1894
chrX15210628915210722715210692130.4926
chr319730433319730465519730451428.1283
chr1213265262613265376513265333724.1071
chrX92206459220925922082323.835
chrX17555728175570031755648422.6573
chrX64808049648086406480824622.2621
chrX15329461915329686015329604321.9525
chrX12976607812976681812976640721.0006
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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