Sample Detail

Basic Information

Manual

Sample ID:

SRR1554203

Source Project ID:

GSE60526

Cell Type:

HeLa

Organism:

Homo sapiens

Treatment:

X-ray

Treatment Dose:

0Gy

Harvested Time:

time after exposure: 0 hr

Layout:

SINGLE

Instrument model:

Illumina Genome Analyzer II

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM1481688-HeLa_input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr14	105297200	105297399	105297299	4.12666	/
chr5	172317000	172317199	172317099	3.88391	/
chr7	149700200	149700999	149700599	3.68795	/
chr11	101500000	101503999	101501999	3.63595	/
chr11	3825200	3887399	3856299	3.47313	/
chr11	101729400	101745599	101737499	3.4383	/
chr10	134177800	134178399	134178099	3.30643	/
chr5	19337400	19337799	19337599	3.26884	/
chr5	29031000	29031399	29031199	3.14777	/
chr5	855600	857599	856599	3.14147	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	202593400	202594399	202594199	3.7233	/
chr21	47791800	47792399	47792099	3.70965	/
chr7	149700200	149700999	149700599	3.68795	/
chr11	101500000	101503999	101501999	3.63595	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download