Sample Detail

Basic Information

Manual

Sample ID:

SRR1554204

Source Project ID:

GSE60526

Cell Type:

HeLa

Organism:

Homo sapiens

Treatment:

X-ray

Treatment Dose:

0Gy

Harvested Time:

time after exposure: 0 hr

Layout:

SINGLE

Instrument model:

Illumina Genome Analyzer II

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM1481688-HeLa_input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	115256400	115256599	115256499	5.20683	/
chr2	108311200	108311399	108311299	4.93279	/
chr7	92289400	92289599	92289499	4.93279	/
chr1	202593400	202594399	202593899	4.53091	/
chr16	24293200	24293399	24293299	4.11066	/
chr21	44598000	44598199	44598099	4.11066	/
chr11	3628800	3629199	3628999	3.827	/
chr7	149700200	149700999	149700599	3.6857	/
chr11	101110800	101110999	101110899	3.56257	/
chr5	13300400	13300599	13300499	3.56257	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	202593400	202594399	202593899	4.53091	/
chr21	44598000	44598199	44598099	4.11066	/
chr7	149700200	149700999	149700599	3.6857	/
chr11	101500000	101503999	101501999	3.50473	/
chr11	4654400	4654799	4654599	3.28028	/
chr1	239869800	239870199	239869999	3.28028	/
chr7	154628800	154629199	154628999	3.28028	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download