DNA Damage Atlas


GSM1481677-HeLa_X-ray_3h_gH2AX_rep1




Basic Information

Manual

Sample ID:   

SRR1554206


Source Project ID:   

GSE60526

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

X-ray


Treatment Dose:   

10Gy


Harvested Time:   

time after exposure: 3 hrs


Layout:   

SINGLE


Instrument model:   

Illumina Genome Analyzer II


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM1481688-HeLa_input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1583625000836251998362509910.1794/
rDNA4007995999.69239/
chr159010320090103399901032998.32864/
chr53563900035639399356391997.84622/
chr31290438001290439991290438997.40323/
chr89162000916219991620997.40323/
chr51727880017279399172790996.76364/
rDNA1260014799136996.61586/
chr131113492001113493991113492996.47783/
chr23602180036021999360218996.47783/
Download the Full Peak List



Motif Analysis

Manual





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