DNA Damage Atlas

GSM1499697-Cas9_RAG1A_OTChr7_SRep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1569822


Source Project ID:   

GSE57283

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9:RAG1A


Treatment Time:   

48hrs


Genotype:   

WT


Targeted break:   

103.6Mb


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr710363020310363199010363118634690.5+
chr711292955111293078111293056019528.8-
chr715593072515593168515593115715922.6+
chr738350065383505823835037010559.3-
chr81436266451436270761436268597318.31+
chr124700275247003293470029876503.03-
chr176807270680769768074865966.31-
chr147858307278583520785832895686.64+
chr173754215937542570375423665608.24-
chr157574623375746869757466595531.66-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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