DNA Damage Atlas


GSM1499699-Cas9_RAG1A_OTChr7_SRep3




Basic Information

Manual

Sample ID:   

SRR1569824


Source Project ID:   

GSE57283

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9:RAG1A


Treatment Time:   

48hrs


Genotype:   

WT


Targeted break:   

103.6Mb


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr710363020310363199010363118634690.5+
chr711292955111293078111293056019528.8-
chr715593072515593168515593115715922.6+
chr738350065383505823835037010559.3-
chr81436266451436270761436268597318.31+
chr124700275247003293470029876503.03-
chr176807270680769768074865966.31-
chr147858307278583520785832895686.64+
chr173754215937542570375423665608.24-
chr157574623375746869757466595531.66-
Download the Full Peak List



Motif Analysis

Manual





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