DNA Damage Atlas

GSM1499704-Cas9_RAG1B_A549_SRep1b

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1569829


Source Project ID:   

GSE57283

Cell Type:   

A549


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9:RAG1B


Treatment Time:   

48hrs


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1136590984365974183659483046976.5-
chr1489054783890554958905507018711.7+
chrX4117505411770641175052967.86+
chr116353402063534224635342202924.22-
chr193613432436134528361343242924.22+
chr145402749054027695540276952909.95-
chr41205607641205611691205609642454.9-
chr114338593343386334433861331983.51-
chr118600061286000813860008121978.57-
chr141025400181025402191025400181978.57+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab