DNA Damage Atlas


GSM1499709-Cas9_RAG1BplusCas9_VEGFA_SRep1




Basic Information

Manual

Sample ID:   

SRR1569834


Source Project ID:   

GSE57283

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9:RAG1B+Cas9:VEGFA


Treatment Time:   

48hrs


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr173979487839797974397963284314.05+
chr223721455937215620372152764240.3+
chr121316892711316908581316901983986.56-
chr41205607221205611891205609663913.71+
chr55617184456172291561720783617.04-
chr19934665199350214993476513363.88+
chr156563466165639641656375373183.1+
chr174731732047317810473175383012.7-
chr116757390167574476675742622689.6+
chr113368203833682476336822562567.9+
Download the Full Peak List



Motif Analysis

Manual





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