DNA Damage Atlas


GSM1499736-Cas9_RAG1BplusATM_TALEN_3ug_SRep2




Basic Information

Manual

Sample ID:   

SRR1569861


Source Project ID:   

GSE57283

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

CaPO4 transfection;nuclease delivery: Cas9:RAG1B;ATM_TALEN


Treatment Time:   

48hrs


Treatment Dose:   

ATM_TALEN_3ug


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr225074510950745327507451111834.64+
chr148905145189058272890550701693.91+
chr31761587271761592441761589491690.47-
chr167102047571023384710227191660.04+
chr114597247459815045977861607.62-
chr106559663065597521655969591579.39-
chr51194830471194832611194830481522.84+
chr105989114859892019598917001496.61+
chr212883668928837367288371021398.28-
chr154425973944261240442605711361.89-
Download the Full Peak List



Motif Analysis

Manual





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