DNA Damage Atlas

GSM1521146-Pol3LM_rnh201_1_b

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1609180,SRR1609181


Source Project ID:   

GSE62181

Organism:   

Saccharomyces cerevisiae


Genotype:   

pol3-L612M rnh201Δ


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12_ref_v245804145938345881713175.2+
chr12_ref_v246691946862746795410626.4+
mit_ref_v22884629423290407923.24+
chr8_ref_v25622815626395625697621.94-
chr12_ref_v24596194602024597797042.29+
chr12_ref_v24628824632554630556697.14+
chr12_ref_v24561014565144561696672.66+
chr12_ref_v24652214656634653066282.48+
chr14_ref_v27834127842777842636052.07-
mit_ref_v28218982625825955492.16-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
mit_ref_v22884629423290405449.23+
mit_ref_v28218982625825953824.57-
chr3_ref_v2336421793698.4+
mit_ref_v21248312894125113579.01+
mit_ref_v25456554952546113040.66+
chr10_ref_v27142067154117149622987.29-
chr13_ref_v24927590555382973.22+
mit_ref_v23220332503324102710.61-
chr15_ref_v21619202525.41+
chr4_ref_v21318112446.89+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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