DNA Damage Atlas

GSM1521157-Pol1YA_rnh201_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1609194


Source Project ID:   

GSE62181

Organism:   

Saccharomyces cerevisiae


Genotype:   

pol1-Y869A rnh201Δ


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_ref_v24322544727438561719.28+
chr15_ref_v22155112172222161431389.21+
chr15_ref_v21145521161331154351277.05-
chr13_ref_v24742674456451212.09+
chr3_ref_v219654651210.37+
chr2_ref_v25097746857571082.17+
chr10_ref_v27117217157437149301069.63-
chr5_ref_v25681855699575692351057.04-
chr12_ref_v23491853518463509821001.4+
chr5_ref_v2408754326242400974.407+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15_ref_v22155112172122161431937.23+
chr9_ref_v24328744614438561585.25+
chr13_ref_v24752631056451556.17+
chr15_ref_v21145671161321154351458.65-
chr2_ref_v25100740757571118.72+
chr5_ref_v24087543184424001095.66+
chr10_ref_v27117277157267149301057.2-
chr16_ref_v25912753865421035.27+
chr5_ref_v25682015699345692351024.97-
chr12_ref_v23491893518083509821024.44+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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