DNA Damage Atlas

GSM1536395-SCC_Control_20140224_15

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638864, SRR1638865


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.807351


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4935330893540219353415990.84+
chr12110507664110508116110507787386.662+
chr14238962502389670023896498277.569+
chr335069163350694263506941792.9606-
chr881343010813437128134357683.2747-
chr1582915146829154928291534682.5542-
chr1177334892773355957733534682.1233-
rDNA0112930661.2132-
rDNA20078245312147757.7848+
chr553865240538659535386552557.2063-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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