DNA Damage Atlas

GSM1536396-SCC_Doxo_Low_20140224_16

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638866, SRR1638867


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Doxorubicin


Treatment Dose:   

0.3mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.872976


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4935330893536749353415322.88+
chr1423896345238967002389661087.6013-
rDNA0111130656.5784-
rDNA20091245332147753.7737+
chr1011246932411246985511246952044.3605+
chr1095687425956880419568794841.4617-
rDNA41495435764245839.2359-
rDNA24543268162633930.7983-
rDNA63099452675527.3678+
chr553864926538658215386552526.6146-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab