DNA Damage Atlas

GSM1536397-SCC_Doxo_High_20140224_18

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638868, SRR1638869


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Doxorubicin


Treatment Dose:   

3.0mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.757282


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1099260462992615889926125439.1883-
rDNA20084236202054536.8133+
rDNA39019404843941433.398+
chr1412049863712049947312049884232.7561+
rDNA484730626.326-
chr1155505916555070585550690326.1383-
rDNA13309168651394725.9857+
rDNA36504525431725.8082+
chr612053868612053949112053888625.3116+
chr765453693654544756545427525.0603-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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