DNA Damage Atlas

GSM1536398-SCC_Acla_Low_20140224_20

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638870, SRR1638871


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Aclarubicin


Treatment Dose:   

0.4mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.923077


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA296530649.4279-
rDNA20074236382147749.3588+
rDNA41495435844316134.118-
chrUn_GL45638910245108671068030.1649-
rDNA63079439699128.4654-
chr855519147555193475551934723.2958-
chr1026294435262946512629465118.0723-
chr612995541012995561012995541016.9996+
chr974635177746353777463537713.2219-
chrUn_JH58430410336310373410356310.5219-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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