DNA Damage Atlas

GSM1536399-SCC_Etop_High_20140224_19

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638872, SRR1638873


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Etoposide


Treatment Dose:   

30mM


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.254315


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0168030660.4029-
rDNA41491435934245856.6809-
rDNA20074236602147754.0742+
chrUn_GL45638910244108491068142.063-
rDNA63219457675540.8088+
chr1026294437262946512629465130.9575-
rDNA24542268162654128.9483+
chrX14348288314348325814348304726.3595+
chrUn_JH58430410335610380510356315.4574-
chrX76598420765993117659870612.1562-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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