DNA Damage Atlas

GSM1536400-SCC_Control_spike-in_20140617_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638874, SRR1638875


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.73433


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17584744275847848758475491467.18+
chr49353308935364393534151247.78+
chr11773350977733543877335346664.224-
chr6137098514137098864137098664660.778+
chr12110507663110508008110507787634.393+
chr4410959554109628141096175418.14-
chr14238963252389689323896610347.522-
chr2277285102772876127728511160.96+
chr15829147708291578782915217153.585+
chr1192423916192424116192423916143.153+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab