DNA Damage Atlas

GSM1536401-SCC_Doxo_Low_spike-in_20140617_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR1638876, SRR1638877


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Doxorubicin


Treatment Dose:   

0.3mM


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.636364


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4935330893539519353415135.828+
chr9533806755338136053381003118.953-
chr11773351337733543877335238103.808+
chr1911691081116919021169190299.9762-
chr175847408758481307584754997.3023+
chr613709866413709912013709866484.8913+
chr1582915144829156098291521784.533+
chr1095687592956881489568794878.2185-
rDNA14356167021557577.6649+
chr311689607116901111169011173.7247-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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