DNA Damage Atlas


GSM1536402-SCC_Doxo_High_spike-in_20140617_3




Basic Information

Manual

Sample ID:   

SRR1638878, SRR1638879


Source Project ID:   

GSE62927

Cell Type:   

squamous cell carcinoma


Organism:   

Mus musculus


Treatment:   

Doxorubicin


Treatment Dose:   

3.0mM


Genotype:   

WT


Spike-in percentage:   

yeast spike-in: nuclei, wild-type strain W303


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

BLESS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.511628



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr613709853613709886413709866483.2079+
rDNA38788403413941452.2968+
chr520661992206630022066263740.2472-
chr1060686616068932606872739.8577+
chr953380731533815595338135938.7373-
rDNA12649167121525736.4477+
chr1099260560992615889926076031.3613+
chr1911690800116921531169190230.8364-
rDNA18271268042633929.1434-
chr1310950680310950755810950741928.6131-
Download the Full Peak List



Motif Analysis

Manual





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